I'm doing analysis with Solexa data, and I try to use Tophat.
However, I'm not sure why sometimes the system would throw out the error messages while sometimes it works correctly.
The error message would be as follows:
Traceback (most recent call last):
File "./tophat", line 2347, in ?
sys.exit(main())
File "./tophat", line 2252, in main
params.read_params = check_reads(params.read_params, reads_list)
File "./tophat", line 1045, in check_reads
observed_formats = set([])
NameError: global name 'set' is not defined
Is it a bug? Or something else?
Thanks.
However, I'm not sure why sometimes the system would throw out the error messages while sometimes it works correctly.
The error message would be as follows:
Traceback (most recent call last):
File "./tophat", line 2347, in ?
sys.exit(main())
File "./tophat", line 2252, in main
params.read_params = check_reads(params.read_params, reads_list)
File "./tophat", line 1045, in check_reads
observed_formats = set([])
NameError: global name 'set' is not defined
Is it a bug? Or something else?
Thanks.
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