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Old 03-10-2009, 07:31 PM   #1
Location: SLC, Utah

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Default Software for Sorting SNPs/ InDels by Affect?

How are folks sorting SNPs and indels into different classes based on their effect on coding sequence? Synonymous/ nonsynonymous/ changes to splice junctions, hits to exons/ introns/ promoters, etc? Any useful software out there?
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Old 10-27-2010, 02:47 PM   #2
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you can use SIFT if the SNPs are in the coding sequence of human genome.
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Old 10-27-2010, 03:24 PM   #3
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See this thread:
Mendelian Disorder: A blogshare of random useful information for general public consumption. [Blog]
Breakway: A Program to Identify Structural Variations in Genomic Data [Website] [Forum Post]
Projects: U87MG whole genome sequence [Website] [Paper]
Michael.James.Clark is offline   Reply With Quote

snps indels

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