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Old 03-10-2009, 07:31 PM   #1
Nix
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Default Software for Sorting SNPs/ InDels by Affect?

How are folks sorting SNPs and indels into different classes based on their effect on coding sequence? Synonymous/ nonsynonymous/ changes to splice junctions, hits to exons/ introns/ promoters, etc? Any useful software out there?
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Old 10-27-2010, 02:47 PM   #2
janeela
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you can use SIFT if the SNPs are in the coding sequence of human genome.
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Old 10-27-2010, 03:24 PM   #3
Michael.James.Clark
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See this thread: http://seqanswers.com/forums/showthr...?t=6576&page=2
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