|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Why GC bias affect the read coverage in RNA-SEQ ? | mozart | General | 8 | 04-26-2019 02:31 AM |
| find all snps/indels | prbndr | Bioinformatics | 2 | 09-20-2011 11:43 AM |
| How do sequencing errors affect de Bruijn graphs? | samanta | General | 2 | 08-02-2011 09:38 AM |
| how to validate SNPs and Indels after assembly? | sulicon | Bioinformatics | 9 | 02-25-2011 05:27 AM |
| 1KG SNPs and Indels file | mpiro | Bioinformatics | 4 | 01-31-2011 04:55 AM |
 |
|
|
Thread Tools |
03-10-2009, 07:31 PM
|
#1 |
|
Member
Location: SLC, Utah Join Date: Jun 2008
Posts: 60
|
Software for Sorting SNPs/ InDels by Affect?
How are folks sorting SNPs and indels into different classes based on their effect on coding sequence? Synonymous/ nonsynonymous/ changes to splice junctions, hits to exons/ introns/ promoters, etc? Any useful software out there?
|
|
|
|
10-27-2010, 02:47 PM
|
#2 |
|
Junior Member
Location: UK Join Date: Oct 2010
Posts: 4
|
you can use SIFT if the SNPs are in the coding sequence of human genome.
|
|
|
|
|
10-27-2010, 03:24 PM
|
#3 |
|
Senior Member
Location: Palo Alto Join Date: Apr 2009
Posts: 213
|
See this thread: http://seqanswers.com/forums/showthr...?t=6576&page=2
__________________
Mendelian Disorder: A blogshare of random useful information for general public consumption. [Blog] Breakway: A Program to Identify Structural Variations in Genomic Data [Website] [Forum Post] Projects: U87MG whole genome sequence [Website] [Paper] |
|
|
|
|
| Tags |
| snps indels |
| Thread Tools | |
|
|
