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Old 10-10-2011, 01:42 AM   #1
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Location: Graz, Austria

Join Date: Feb 2010
Posts: 219
Default FS tag in GATK

I recently updated my analysis pipeline to GATK-1.2.35

I tried to run the VariantFiltration part it didn't detect the FS tag. All the other tags (QD, QUAL, DP, MQ0 still work fine).

Anyone can help me with that?
Moreover, if I get that to run (what I'm hoping for) what would you choose as a cutoff to filter strandbiased sites?
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