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01-26-2011, 12:52 PM
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#1 |
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Member
Location: US Join Date: Nov 2009
Posts: 10
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1KG SNPs and Indels file
Greetings,
Is there any place to download 1000 genome SNPs and Indels data in a single merged file for each pilot (pilot 1 , 2 , and 3) ? I am trying to use GATK and thought to use 1KG indels and SNPs vcf files to recalibrate my calls. I apprecite your input. |
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01-26-2011, 01:17 PM
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#2 |
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Member
Location: US Join Date: Nov 2009
Posts: 10
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01-29-2011, 03:17 PM
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#3 |
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Junior Member
Location: US Join Date: Apr 2009
Posts: 2
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I have the same question but I can't figure out which files to use. There are many folders and looks confusing to me.
Can you or someone please explain which files to use? Thanks in advance. . |
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01-30-2011, 05:39 PM
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#4 | |
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Senior Member
Location: Palo Alto Join Date: Apr 2009
Posts: 213
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Quote:
pirooz, there's a README in with the Phase 1 release from December that explains what everything is. 
__________________
Mendelian Disorder: A blogshare of random useful information for general public consumption. [Blog] Breakway: A Program to Identify Structural Variations in Genomic Data [Website] [Forum Post] Projects: U87MG whole genome sequence [Website] [Paper] |
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01-31-2011, 04:55 AM
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#5 |
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Junior Member
Location: US Join Date: Apr 2009
Posts: 2
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Thanks Michael ... appreciate your comment.
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