Hi all,
I'm working with the iGenomes annotation of ENSEMBL and I noticed that cuffdiff output merges tss's. As mentioned before in another thread cuff merge reassigns the tss_id. (http://seqanswers.com/forums/archive...p/t-18070.html). Does someone know how the new tss's are produced? How separate must two tss's be to consider them different?
Thanks a lot!
I'm working with the iGenomes annotation of ENSEMBL and I noticed that cuffdiff output merges tss's. As mentioned before in another thread cuff merge reassigns the tss_id. (http://seqanswers.com/forums/archive...p/t-18070.html). Does someone know how the new tss's are produced? How separate must two tss's be to consider them different?
Thanks a lot!