SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
FPKM is 0, when using cufflinks in galaxy on the net chenyao Bioinformatics 1 12-04-2012 07:12 AM
cufflinks FPKM >>> Cuffdiff FPKM peromhc Bioinformatics 6 10-17-2012 02:07 PM
Cufflinks and cuffdiff FPKM values combiochem Bioinformatics 12 10-14-2012 12:37 AM
cufflinks-1.0.3 produces very high FPKM values when compared to cufflinks-0.9.3. Why? pinki999 Bioinformatics 5 06-09-2012 07:48 AM
Fpkm differences between versions of Cufflinks zorph Bioinformatics 1 02-15-2012 03:19 PM

Reply
 
Thread Tools
Old 05-09-2011, 12:30 PM   #1
lewewoo
Member
 
Location: Moon

Join Date: Apr 2011
Posts: 60
Default Questions: Cufflinks FPKM

After cufflinks and cuffcompare, every transcripts were assigned their FPKM numbers, some papers used the longest transcripts to present the gene FPKM, others used the transcript with highest FPKM to present the gene FPKM; my first question is which one is better if comparing expression differentiation.
I also used CuffDiff, there are FPKM tracking files, and it is said that the FPKM for expression comparison is a sum of all the trascript FPKM, is this way better than those as above?
Thanks!
lewewoo is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 11:48 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO