Hi all,
I want to ask how to specify conditions for DEU detection in DEXSeq.
I see in DESeq, after I do estimateDispersion, I can use
res<-nbinomTest(cds,"sample1","sample2")
to specify which conditions I want to compare.
But in DEXseq, I don't see that.
So in DEXseq, do I need to import just the samples I want to compare every time?
Thanks!
I want to ask how to specify conditions for DEU detection in DEXSeq.
I see in DESeq, after I do estimateDispersion, I can use
res<-nbinomTest(cds,"sample1","sample2")
to specify which conditions I want to compare.
But in DEXseq, I don't see that.
So in DEXseq, do I need to import just the samples I want to compare every time?
Thanks!
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