Hello,
I wanted to know if there is a good way to find insertions (such as transposons, viruses etc) if I have sequenced a genome which also has a refernce from the web databases. Is it ok to use the gsMapper for the virus genome(if something is found) or the reference genome and look at the HCdiffs or neither of them ?
I wanted to know if there is a good way to find insertions (such as transposons, viruses etc) if I have sequenced a genome which also has a refernce from the web databases. Is it ok to use the gsMapper for the virus genome(if something is found) or the reference genome and look at the HCdiffs or neither of them ?