I am trying to use tximport to analyze salmon output, but I am stuck with the error below and not sure which files are the problematic ones
this is how I run tximport:
Code:
summarizing abundance summarizing counts summarizing length Error: all(names(aveLengthSampGene) == rownames(lengthMat)) is not TRUE In addition: Warning message: In names(aveLengthSampGene) == rownames(lengthMat) : longer object length is not a multiple of shorter object length
Code:
txi.salmon <- tximport(files, type = "salmon", tx2gene = tx2gene, reader = read_tsv)
Code:
sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.9.5 (Mavericks) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] readr_1.0.0 tximport_1.0.3 tximportData_1.0.2 loaded via a namespace (and not attached): [1] assertthat_0.1 tools_3.3.1 tibble_1.1 Rcpp_0.12.6 tcltk_3.3.1
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