I encountered problems after re-installing DESeq. I had DESeq 1.4.1 installed in R 2.13.0 (Win 7) for a couple of weeks now, running my scripts without problems. Today I re-installed DESeq (though it's still at 1.4.1) and now I run into problems. I am using exactly the same script which used to work previously:
I do not understand this error (the last two lines in above code-block).
Does anyone know how I can fix this?
Code:
> setwd("C:/Documents and Settings/azazel/Desktop/workspace") > library(DESeq) > countsTable <- read.table(file="DESeq.in", header=TRUE, stringsAsFactors=TRUE) > rownames(countsTable) <- countsTable$gindex > countsTable <- countsTable [,-1] > conds <- c("x1","x2","x3","x4","x5","x6","x7","x8") > cds <- newCountDataSet(countsTable,conds) Error in validObject(.Object) : invalid class "CountDataSet" object: undefined class for slot "experimentData" ("MIAxE")
Does anyone know how I can fix this?
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