If you do happen to perform such a comparison, please do post a link to it here and/or on biostars, since I expect many people would find it interesting.
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Originally posted by Zimbobo View PostHello,
does anyone know of any software that produces simulated RNA-Seq data. I am interested in questions like how many reads are needed for a good assembly with velvet for example, what read errors produce which problems in the assembly. Thanks in advance for any pointers.Michael Black, Ph.D.
ScitoVation LLC. RTP, N.C.
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Originally posted by mbblack View PostWhy not download a real data set from NCBI and then randomly sample from that to derive pseudo-data sets of varying read depths? That way you would have an realistic baseline to compare to.
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