Hi there,
I have just run a standard Local Blast using Blast+:
blastx -db mydb -query mysample -evalue 0.00001 -out blastxresult
and I wonder: How to check the number of blast hits? The number of 'significant' cites in the output file is the number of hits?
I alternative tried other approaches such as get a tabular or a xml format:
blastx -db mydb -query mysample -evalue 0.00001 -outfmt 6 -out tab_blastxresult
The number of rows is the number of hits?
blastx -db mydb -query mysample -evalue 0.00001 -outfmt 5 -max_target_seqs 10 -out xml_blastxresult
No idea about count hits in this format.
Any help will be appreciated,
I have just run a standard Local Blast using Blast+:
blastx -db mydb -query mysample -evalue 0.00001 -out blastxresult
and I wonder: How to check the number of blast hits? The number of 'significant' cites in the output file is the number of hits?
I alternative tried other approaches such as get a tabular or a xml format:
blastx -db mydb -query mysample -evalue 0.00001 -outfmt 6 -out tab_blastxresult
The number of rows is the number of hits?
blastx -db mydb -query mysample -evalue 0.00001 -outfmt 5 -max_target_seqs 10 -out xml_blastxresult
No idea about count hits in this format.
Any help will be appreciated,
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