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Old 03-23-2016, 02:06 AM   #1
m_elena_bioinfo
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Location: Ospedali Riuniti di Bergamo, ITALY

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Default Calculate uniformity of coverage

Dear all,
How can I calculate the uniformity of coverage (% of bases >0.2x mean)from a bam file?
Thanks!!
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Old 03-25-2016, 07:44 PM   #2
Brian Bushnell
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BBMap's "pileup.sh" script will calculate the standard deviation of coverage on a per-sequence basis, from a sam/bam file.
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