Hi,
I would like to use a program that requires bam files with AM flag (it's "the smallest template-independent mapping quality of segments in the rest"). Usually, I use bwa-mem, but this algorithm doesn't provide this flag. Do you know any algorithm that does ?
Thanks in advance !
I would like to use a program that requires bam files with AM flag (it's "the smallest template-independent mapping quality of segments in the rest"). Usually, I use bwa-mem, but this algorithm doesn't provide this flag. Do you know any algorithm that does ?
Thanks in advance !