I have dowloaded txt file NGS data from GEO, however the format of this file show like this:
chr1:3053032-3053034 53 1 11.469303
chr1:3333837-3333843 26 0 11.469303
chr1:3334422-3334449 12 0 5.522257
chr1:3473143-3473144 22 0 9.770147
chr1:3671806-3671822 14 0 6.371835
chr1:3937230-3937239 12 0 5.522257
chr1:3985018-3985079 11 0 5.097468
chr1:4141099-4141105 52 0 22.513818
How can I transfer this to standard format like this
#bin chrom chromStart chromEnd name score floatScore
1470 chr7 116099071 116100373 26384 720 2.183
1589 chr5 131622266 131623568 26442 679 2.06
1590 chr5 131854028 131855330 26415 693 2.102
1591 chr5 131859918 131861220 26451 675 2.048
1592 chr5 132109996 132111298 26337 764 2.317
1593 chr5 132140320 132141622 26374 729 2.21
anyone can help?
chr1:3053032-3053034 53 1 11.469303
chr1:3333837-3333843 26 0 11.469303
chr1:3334422-3334449 12 0 5.522257
chr1:3473143-3473144 22 0 9.770147
chr1:3671806-3671822 14 0 6.371835
chr1:3937230-3937239 12 0 5.522257
chr1:3985018-3985079 11 0 5.097468
chr1:4141099-4141105 52 0 22.513818
How can I transfer this to standard format like this
#bin chrom chromStart chromEnd name score floatScore
1470 chr7 116099071 116100373 26384 720 2.183
1589 chr5 131622266 131623568 26442 679 2.06
1590 chr5 131854028 131855330 26415 693 2.102
1591 chr5 131859918 131861220 26451 675 2.048
1592 chr5 132109996 132111298 26337 764 2.317
1593 chr5 132140320 132141622 26374 729 2.21
anyone can help?
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