Im using Bowtie and want to know if it is posible to make bowtie include the read or alignment length in the output results?
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Originally posted by scirocco View PostIm using Bowtie and want to know if it is posible to make bowtie include the read or alignment length in the output results?
There's not; you have to deduce that from the output. Since gapped alignments are not yet supported (as of 0.9.8.1), it's always equal to the length of the read - so it's simple to write a script to calculate it.
Thanks,
Ben
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