Hi
I am working with Solexa RNAseq where I want to compare 2 classes (e.g. normal vs sick) with 3 biological samples in each (e.g. 3 patients) and find differentially expressed genes/tags between the 2 classes.
Does anybody have suggestions on which test/program (preferable freeware) or online tool that I can use? Perhaps an R package?
So far I have looked into SAGEBetaBin:
and it seemed to be working fine a few months ago, but now I have troubles submitting.
Thanks,
Lene
I am working with Solexa RNAseq where I want to compare 2 classes (e.g. normal vs sick) with 3 biological samples in each (e.g. 3 patients) and find differentially expressed genes/tags between the 2 classes.
Does anybody have suggestions on which test/program (preferable freeware) or online tool that I can use? Perhaps an R package?
So far I have looked into SAGEBetaBin:
and it seemed to be working fine a few months ago, but now I have troubles submitting.
Thanks,
Lene
Comment