I want to run ExomeCNV on some of my bam files. I tried to use bam2coverage to convert the bam files to coverage files with no success. I used the version of samtool specified in the User Guidebook. Yet the output contains zeros in the last 4 coloumns. Any ideas how to get around this?
I noticed that there is a post from Emily who had the same problem. However none have posted an answer. It would so helpful for me to know how Emily solved this problem.
Thanks
Latha
I noticed that there is a post from Emily who had the same problem. However none have posted an answer. It would so helpful for me to know how Emily solved this problem.
Thanks
Latha
Comment