Hello, guys, I am completely new in Linux Operation System and genomics software.
Recently I am learning to use SOAPdenovo. I had downloaded the latest version of SOAPdenovo (1.05), and unpacked it, and also type"make" and "make install" to install it.
After that, I was also prepared the config file.
then, I just type "./SOAPdenvo"
computer says: "
Usage: SOAPdenovo <command> [option]
pregraph construction kmer-graph
contig eliminate errors and output contigs
map map reads to contigs
scaff scaffolding
all doing all the above in turn
then, I type "./soapdenovo all -s config_file -o output_prefix"
but the computer only says: "bash: ./soapdenovo: No such file or directory"
therefore, I had tried all that I can, but the software just cannot run properly. So Please tell me how to get it started properly!
Just thanks so much for help!
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Recently I am learning to use SOAPdenovo. I had downloaded the latest version of SOAPdenovo (1.05), and unpacked it, and also type"make" and "make install" to install it.
After that, I was also prepared the config file.
then, I just type "./SOAPdenvo"
computer says: "
Usage: SOAPdenovo <command> [option]
pregraph construction kmer-graph
contig eliminate errors and output contigs
map map reads to contigs
scaff scaffolding
all doing all the above in turn
then, I type "./soapdenovo all -s config_file -o output_prefix"
but the computer only says: "bash: ./soapdenovo: No such file or directory"
therefore, I had tried all that I can, but the software just cannot run properly. So Please tell me how to get it started properly!
Just thanks so much for help!
75mph is online now Report Post Edit/Delete Message Reply With Quote Multi-Quote This Message Quick reply to this message
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