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Old 02-23-2012, 09:11 AM   #1
vinay052003
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Default TCGA RNA-Seq

Hi there,
Is anyone here using TCGA's raw RNA-Seq data? If so, could please tell if those the fastq files need to be adapter trimmed before alignment.

Thanks.
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Old 02-27-2012, 06:09 AM   #2
GenoMax
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Not sure if the info you are looking for is in here: https://wiki.nci.nih.gov/display/TCG...ser%27s+Guides

Last edited by GenoMax; 02-27-2012 at 06:21 AM.
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Old 02-27-2012, 12:12 PM   #3
vinay052003
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@GenoMax:
Thanks a lot. I was looking through the help wiki already. I think I've figured out the solution to the problem. If you like, please see:
http://seqanswers.com/forums/showthread.php?t=17939

Thanks once again.
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