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09-02-2008, 02:12 PM
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Member
Location: Malmö Join Date: Sep 2008
Posts: 37
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Maq and indel discovery
I am using solexa paired-end data and after I mapped my reads with the MAQ software to a reference sample a message appears on the screen:
"[maq_indel_pe] the indel detector only works with short-insert mate-pair reads". I am working with fragment sizes that have an average length of 315 bp and in the parameters -a and -A of the 'match' function I put the number 350. My question is, what does this message mean and am I not able to detect indels and, if not, why is that? Best regards, Joćo Fadista Last edited by fadista; 09-02-2008 at 02:13 PM. Reason: forgot to put the software that I used |
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| Tags |
| indel, maq, paired-end, solexa |
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