Hi all,
I'm dealing with low-quality reads of a bacteria which are 100 base long. Thus, most of the software cannot map back most of the reads to the reference genome with no more than three mismatches. So can I use BLAST to do the mapping work? Will it to slow?
Thanks
I'm dealing with low-quality reads of a bacteria which are 100 base long. Thus, most of the software cannot map back most of the reads to the reference genome with no more than three mismatches. So can I use BLAST to do the mapping work? Will it to slow?
Thanks
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