Hello all,
After converting Eland alignment export files to sam, I tried to convert sam to bam by samtools view -bt ref.fa.fai,
what do these mean shown on the screen? Thanks.
[sam_read1] reference 'chr11.fa' is recognized as '*'.
[sam_read1] reference 'chr6.fa' is recognized as '*'.
[sam_read1] reference 'chr6.fa' is recognized as '*'.
[sam_read1] reference 'chr11.fa' is recognized as '*'.
[sam_read1] reference 'chr11.fa' is recognized as '*'.
[sam_read1] reference 'chrY.fa' is recognized as '*'.
[sam_read1] reference 'chr1.fa' is recognized as '*'.
[sam_read1] reference 'chr1.fa' is recognized as '*'.
[sam_read1] reference 'chrX.fa' is recognized as '*'.
After converting Eland alignment export files to sam, I tried to convert sam to bam by samtools view -bt ref.fa.fai,
what do these mean shown on the screen? Thanks.
[sam_read1] reference 'chr11.fa' is recognized as '*'.
[sam_read1] reference 'chr6.fa' is recognized as '*'.
[sam_read1] reference 'chr6.fa' is recognized as '*'.
[sam_read1] reference 'chr11.fa' is recognized as '*'.
[sam_read1] reference 'chr11.fa' is recognized as '*'.
[sam_read1] reference 'chrY.fa' is recognized as '*'.
[sam_read1] reference 'chr1.fa' is recognized as '*'.
[sam_read1] reference 'chr1.fa' is recognized as '*'.
[sam_read1] reference 'chrX.fa' is recognized as '*'.
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