Can anyone help me out with this problem?
I have run my mRNA sequencing samples by TopHat.
I understand that junctions.bed gives out all the possible splices, but how can I dig out the novel form from all these data? Any tool available ?Not simply by eyeballing through UCSC genome browser after loading the bed file?
Thanks in advance.
I have run my mRNA sequencing samples by TopHat.
I understand that junctions.bed gives out all the possible splices, but how can I dig out the novel form from all these data? Any tool available ?Not simply by eyeballing through UCSC genome browser after loading the bed file?
Thanks in advance.