SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Complete Genomics Variant Calls quicksand21 Bioinformatics 2 10-11-2011 07:21 AM
Complete Genomics user rworthi Introductions 4 07-01-2011 10:19 AM
Complete Genomics dbailey Introductions 4 12-02-2009 12:55 PM
Question and Confuse about Complete Genomics Patrick The Pipeline 5 10-13-2009 07:19 AM
Hi from Complete Genomics! thondeboer Introductions 5 03-27-2009 06:12 AM

Reply
 
Thread Tools
Old 02-20-2014, 01:45 PM   #1
augustblackburn
Junior Member
 
Location: San Antonio

Join Date: Feb 2014
Posts: 3
Default Complete Genomics CNVs and SVs

Any suggestions for tools/pipelines to identify CNVs and SVs from Complete Genomics data? Anyone with any experience doing this?

Has anyone tested how well any of the following tools work when using the sam/bam files created by the evidence2sam function in CGAtools?

CNVnator
RDXplorer
BreakDancer
GASV

Fell free to comment on anything you have tried.
I will update this thread as I try different tools.
augustblackburn is offline   Reply With Quote
Reply

Tags
complete genomics, copy number analysis, pipeline development, structural variation

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:19 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO