Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Cufflinks memory usage oscarluoinau Bioinformatics 9 12-10-2012 06:55 AM
Velvet Memory usage VNou Bioinformatics 0 07-11-2012 12:11 AM
Velvet-Memory usage VNou Bioinformatics 0 07-05-2012 09:40 AM
Memory usage Seta General 2 04-05-2011 10:44 AM
Memory Usage in Newbler 2.3 smg283 454 Pyrosequencing 5 11-09-2010 07:46 AM

Thread Tools
Old 02-26-2013, 08:20 AM   #1
Junior Member
Location: Helsinki

Join Date: Feb 2012
Posts: 6
Red face cuffdiff memory usage

I updated to the latest version of Cufflinks and could not rerun my analysis with cuffdiff because of lack of memory.
I tried in a computer with more memory and I used the time command to check for the memory usage and it seems it required 72GB of RAM to run two conditions with 4 replicates each.
Has anyone experienced something similar?
Before updating I successfully ran the same 8 human samples with cuffdiff without the process being killed due to lack of memory, so is there a memory leak, or this is the amount of memory it now requires?
acervera is offline   Reply With Quote
Old 05-13-2013, 03:58 AM   #2
Junior Member
Location: London

Join Date: May 2013
Posts: 1

I have a similar problem. I actually have 80 samples and it completely fails due to high memory needs.
filipegracio is offline   Reply With Quote

cuffdiff, cufflinks, leak, memory, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:54 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO