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Old 08-27-2013, 11:40 PM   #1
maimaiti2008
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Default How to do a discontinuous MEGABLAST using megablast?

How to do a discontinuous MEGABLAST using megablast? Thanks in advance!
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Old 08-27-2013, 11:52 PM   #2
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Assuming you're doing it locally and have downloaded BLAST+, then you should be using the blastn program with the "-task dc-megablast" flag.
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Old 08-28-2013, 12:04 AM   #3
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The user manual is here ... http://www.ncbi.nlm.nih.gov/books/NBK1763/
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Old 08-28-2013, 11:06 AM   #4
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Quote:
Originally Posted by A.N.Other View Post
Assuming you're doing it locally and have downloaded BLAST+, then you should be using the blastn program with the "-task dc-megablast" flag.
Thanks so much!
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Old 08-28-2013, 11:07 AM   #5
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Quote:
Originally Posted by A.N.Other View Post
The user manual is here ... http://www.ncbi.nlm.nih.gov/books/NBK1763/
thanks very much!
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