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Old 04-05-2014, 03:56 AM   #1
IsBeth
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Question DESeq2 for R-version 3.1?

Hello,

I've updated my version of R today from 3.0.2 to 3.1. Now when I'm trying to install DESeq2, I get a warning message like this:

Warning in install.packages :
package ‘DESeq2’ is not available (for R version 3.1.0 RC)

A similar problem appears with package TCC. Can I do something about that or do I have to wait? There's also a problem with installing lattice and spatial, because these directories are not writable now (I'm using Ubuntu)

Thanks
Beth
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Old 04-05-2014, 05:36 AM   #2
Michael Love
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DESeq2 is a Bioconductor package
http://www.bioconductor.org/install/...uctor-packages

(ok I see you already knew that...)

yes I believe you have to wait a week for the next release of Bioc.

there is information here on the timing of the Bioc 2.14 release with R 3.1

http://www.bioconductor.org/develope...ease-schedule/

Last edited by Michael Love; 04-05-2014 at 05:46 AM.
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Old 04-11-2014, 07:56 AM   #3
IsBeth
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Thank you! I think I will have to wait a few days then, but no problem ^^
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