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Old 12-16-2014, 05:04 AM   #1
Itay.zemach
Junior Member
 
Location: Israel

Join Date: May 2013
Posts: 6
Default Basic bioinformatics for dummy

Hello everyone,

My study involove GWAS methods in tomato. I genotyped 109 lines for 7720 SNP markers and I have the results in excel and here is small example:
SNP NAME CHR POSITION sample1 sample2 sample3............

the SNP scores are in IUPAC format.
I want to start GWAS this data together with 70 phenotypes and first thing that I need to know is what is HAPMAP format and how can I do it by myself.
I read that every GWAS algorithm need this first stage.
Please explain it as simple as you can


Thanks,
Itay
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