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Old 06-21-2013, 02:36 AM   #1
rkizen
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Location: Edinburgh

Join Date: Jun 2013
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Default miRanalyzer installation

Has anyone successfuly installed the stand alone version of miRanalyzer?

I am having trouble using the makeSeqObj.jar package. Usage according to the package, the usage is:

java -jar MakeSeqObj.jar input-fasta-file

However when I try that I get:

java -jar makeSeqObj.jar genome.fa
Converting: genome.fa
java.io.FileNotFoundException: null/genome.zip (No such file or directory)
at java.io.FileOutputStream.open(Native Method)
at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
at java.io.FileOutputStream.<init>(FileOutputStream.java:99)
at sequences.FastaByteUtil.readWriteFastaByteUCMFasta(FastaByteUtil.java:41)
at miRanalyzerV2.MakeSeqOBJ.main(MakeSeqOBJ.java:48)

Any ideas as to what is going on?
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Old 06-21-2013, 03:32 AM   #2
rkizen
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Ok it required the full path of the input file. I guess makeSeqObj.ja gets the path directly from the argument instead of making it from the current working directory. Seems strange.
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Old 07-09-2013, 11:30 AM   #3
hmortens
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it was a pain to install. but I got it working. now i wonder if the miRbase versions that the DB is built with are really old?
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Old 02-25-2015, 05:13 AM   #4
monifabbro23
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Confirmed! you have to put the full path of your fasta file.
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