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I seem to recall a script for calculating the average distribution of tags per gene from a ChIP-seq experiment. I thought this was a BEDTools script, but don't see it in there. I also couldn't find it in SAMTools. Does anyone know of such a publically available script?
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Maybe coverageBEd in bedtools gets closer to what you want?Originally posted by Giles View Post
DarioCode:coverageBed -abam myreads.bam -b mygenes.gft -hist
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