miRNa sequencing and comparision

bfantinatti · 05-02-2013, 05:42 PM

Hello guys,
I have a project in which I intend to analyse miRNAs from various tissues between two different groups. Ex: To compare liver miRNAs from group 1 against liver miRNAs from groups 2 (both groups are the same species and the same sex. The difference is as specific condition - which is the key of this analysis).
The data was obtained through Illumina sequencing.
I have found a software that can give me this comparision I need (MirnaKey), this software apparently does not work (at least here in my machine - Linux mint 14).
I would like to know if any one there knows annother miRNA software capable to do this kind of analysis.
Any one there already did this miRNA comparision?

Best regards

rlegendre · 05-02-2013, 11:56 PM

Hi !

You have miRNATools https://sites.google.com/site/mirnatools/ for all miRNA analysis

Bye,
Rachel

bfantinatti · 05-03-2013, 03:44 AM

Thank you a lot Rachel, I wiil take a look

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05-02-2013, 05:42 PM	#1
bfantinatti Member Location: Sao Paulo/Brazil Join Date: Aug 2012 Posts: 22	miRNa sequencing and comparision Hello guys, I have a project in which I intend to analyse miRNAs from various tissues between two different groups. Ex: To compare liver miRNAs from group 1 against liver miRNAs from groups 2 (both groups are the same species and the same sex. The difference is as specific condition - which is the key of this analysis). The data was obtained through Illumina sequencing. I have found a software that can give me this comparision I need (MirnaKey), this software apparently does not work (at least here in my machine - Linux mint 14). I would like to know if any one there knows annother miRNA software capable to do this kind of analysis. Any one there already did this miRNA comparision? Best regards

05-03-2013, 03:44 AM	#3
bfantinatti Member Location: Sao Paulo/Brazil Join Date: Aug 2012 Posts: 22	Thank you Thank you a lot Rachel, I wiil take a look

05-02-2013, 11:56 PM	#2
rlegendre Junior Member Location: Paris, France Join Date: Sep 2010 Posts: 7	Hi ! You have miRNATools https://sites.google.com/site/mirnatools/ for all miRNA analysis Bye, Rachel