Hi all,
I used David for RNA seq analysis and i am confused by understanding its output.
The input for David is a list of gene symbol and the output for the clustering analysis is this for example:
Annotation Cluster 4 Enrichment Score: 5.027140988398066
Category Term Count % PValue Genes Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR
GOTERM_BP_FAT GO:0030030~cell projection organization 48 5.217391304 6.49E-08 749 368 13528 2.355836768 1.86E-04 1.86E-04 1.16E-04
GOTERM_BP_FAT GO:0007411~axon guidance 10 1.086956522 0.137379774 749 107 13528 1.687982731 1 0.809464215 92.92162514
The analysis that we chose is by the GO.
These are only partial results.
The cluster includes 13 GO's in total and those i showed are the first and the last.
So,both are in the same cluster, the first is significant, but the second isnt..?
and I really want to use the second
How should i treat it?
Thanks,
Pap
I used David for RNA seq analysis and i am confused by understanding its output.
The input for David is a list of gene symbol and the output for the clustering analysis is this for example:
Annotation Cluster 4 Enrichment Score: 5.027140988398066
Category Term Count % PValue Genes Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR
GOTERM_BP_FAT GO:0030030~cell projection organization 48 5.217391304 6.49E-08 749 368 13528 2.355836768 1.86E-04 1.86E-04 1.16E-04
GOTERM_BP_FAT GO:0007411~axon guidance 10 1.086956522 0.137379774 749 107 13528 1.687982731 1 0.809464215 92.92162514
The analysis that we chose is by the GO.
These are only partial results.
The cluster includes 13 GO's in total and those i showed are the first and the last.
So,both are in the same cluster, the first is significant, but the second isnt..?
and I really want to use the second
How should i treat it?
Thanks,
Pap
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