Dear all,
I need to analysis some raw data using bowtie, then transfer them to cisgenome to make a deeper analysis. Now I get the results from bowtie, just like this7 out of all)
44 + 6 67542638 AGGGGATAGATACCCCATATACCCTGGTGCAATTAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
45 + 16 19579916 AGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 675
46 + 12 48595908 AATGCAAATCAAAACCACAATGAGCTACCATCTCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 19
47 + 19 17650887 AAACACACACAAGGTGTTACTAAGCATTACCCGTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
48 + 4 155793608 AACCAATCCCAGTTACCAGGAGATGCCAAATGCTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
49 - 4 108634190 ATAGCTATTAAGGGAAACAGACGATAATCCAACTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0 14:T>C
29 - 1 91611574 TTTCCTTGTATAAACAAGCAAATATTTATACTGGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 6 3:A>G
could some tell me the meaning of last 3 columns? I cannot understand....
And do some know what I can do next to analysis them using cisgenome?
Thanks in advance!!
I need to analysis some raw data using bowtie, then transfer them to cisgenome to make a deeper analysis. Now I get the results from bowtie, just like this7 out of all)
44 + 6 67542638 AGGGGATAGATACCCCATATACCCTGGTGCAATTAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
45 + 16 19579916 AGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 675
46 + 12 48595908 AATGCAAATCAAAACCACAATGAGCTACCATCTCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 19
47 + 19 17650887 AAACACACACAAGGTGTTACTAAGCATTACCCGTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
48 + 4 155793608 AACCAATCCCAGTTACCAGGAGATGCCAAATGCTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0
49 - 4 108634190 ATAGCTATTAAGGGAAACAGACGATAATCCAACTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 0 14:T>C
29 - 1 91611574 TTTCCTTGTATAAACAAGCAAATATTTATACTGGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 6 3:A>G
could some tell me the meaning of last 3 columns? I cannot understand....
And do some know what I can do next to analysis them using cisgenome?
Thanks in advance!!
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