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Old 10-28-2011, 07:43 PM   #1
johnsequence
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Location: california

Join Date: Jan 2010
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Default genotype info from MAQ

Hello,

How to derive the genotype info (e.g. A/B) directly from MAQ alignment? It should call the genotype before SNP calling, but what I get is the SNP calling and not clear which file to get the genotype info for the final SNPs. Thanks.

John
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