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POSITION SUMMARY
We are looking for an experienced biomedical informatics developer to join a dynamic project team developing the next generation of drug target identification and development tools for biomedical researchers.
DUTIES AND RESPONSIBILITIES
Essential Functions:
• Develop software for integration of heterogeous biological data types using semantic web as well as traditional bioinformatics techniques
• Implement hypothesis identification, comparison, and scoring analytics for knowledge-based computational systems biology system that enables biomedical researchers to make effective drug target selection decisions
• Performance tuning and optimization of algorithms and bioinformatics data processing pipelines
• Participate in the design and implementation of data sources used by analytics
Marginal Functions:
• Extend and integrate computable disease models used by analytics
KNOWLEDGE, SKILLS AND ABILITIES
• Strong applied math skills in graph theory and statistics, ability to reason using summary statistics
• Understanding of target identification approaches for drug discovery
• Demonstrated ability to develop innovative ideas and execute effectively against them in a highly collaborative environment
• Familiarity with biomedical ontologies (e.g. GO, UMLS), biomedical data exchange formats (e.g. SBML, BioPax), and biomedical databases (e.g. MEDLINE)
• Working understanding of molecular and cellular biology concepts, and eagerness to help advance biomedical discovery
• Knowledge of scientific computing workflows, including analytics, visualization and pipeline workflow for data processing
• Ability to work effectively in an agile, release-early release-often development environment
• Ability to select among existing methodologies and tools, and where necessary develop new approaches, to drive design processes and communicate design rationales
• Exceptional analytic thinking and demonstrated ability to independently analyze large-scale datasets
• Expert Excel skills and ability to use basic statistical packages (e.g. R)
• Strong visual, verbal, and written communication skills
EXPERIENCE
Minimum
• Experience using biomedical ontologies (MeSH, UMLS, GO, etc), controlled vocabularies, or semantic datasets (RDFS, OWL, etc)
• Experience developing scientific analytics or pipelines used in drug discovery workflows
Preferred
• Experience developing in an agile team-based environment, including knowledge of SVN, continuous integration, etc.
• Experience developing web-based front-ends for scientific computing resources, with an understanding of modern web frameworks
• 3+ years experience programming Java
EDUCATION
Minimum
• 5+ years bioinformatics experience with a MS or higher degree in Computer Science, Bioinformatics, or related field
Preferred
• 7+ years industry experience with a PhD in Biomedical Informatics
Notice to Recruiting Agencies
If you represent a recruiting agency, please do not submit resumes to any person or any email address at Ingenuity Systems, unless your firm has a written agreement with Ingenuity Systems. Please refrain from contacting any Ingenuity Systems employee with the intent to solicit business. Ingenuity Systems is not responsible for any fees related to unsolicited resumes.
To apply: Click on the link below
We are looking for an experienced biomedical informatics developer to join a dynamic project team developing the next generation of drug target identification and development tools for biomedical researchers.
DUTIES AND RESPONSIBILITIES
Essential Functions:
• Develop software for integration of heterogeous biological data types using semantic web as well as traditional bioinformatics techniques
• Implement hypothesis identification, comparison, and scoring analytics for knowledge-based computational systems biology system that enables biomedical researchers to make effective drug target selection decisions
• Performance tuning and optimization of algorithms and bioinformatics data processing pipelines
• Participate in the design and implementation of data sources used by analytics
Marginal Functions:
• Extend and integrate computable disease models used by analytics
KNOWLEDGE, SKILLS AND ABILITIES
• Strong applied math skills in graph theory and statistics, ability to reason using summary statistics
• Understanding of target identification approaches for drug discovery
• Demonstrated ability to develop innovative ideas and execute effectively against them in a highly collaborative environment
• Familiarity with biomedical ontologies (e.g. GO, UMLS), biomedical data exchange formats (e.g. SBML, BioPax), and biomedical databases (e.g. MEDLINE)
• Working understanding of molecular and cellular biology concepts, and eagerness to help advance biomedical discovery
• Knowledge of scientific computing workflows, including analytics, visualization and pipeline workflow for data processing
• Ability to work effectively in an agile, release-early release-often development environment
• Ability to select among existing methodologies and tools, and where necessary develop new approaches, to drive design processes and communicate design rationales
• Exceptional analytic thinking and demonstrated ability to independently analyze large-scale datasets
• Expert Excel skills and ability to use basic statistical packages (e.g. R)
• Strong visual, verbal, and written communication skills
EXPERIENCE
Minimum
• Experience using biomedical ontologies (MeSH, UMLS, GO, etc), controlled vocabularies, or semantic datasets (RDFS, OWL, etc)
• Experience developing scientific analytics or pipelines used in drug discovery workflows
Preferred
• Experience developing in an agile team-based environment, including knowledge of SVN, continuous integration, etc.
• Experience developing web-based front-ends for scientific computing resources, with an understanding of modern web frameworks
• 3+ years experience programming Java
EDUCATION
Minimum
• 5+ years bioinformatics experience with a MS or higher degree in Computer Science, Bioinformatics, or related field
Preferred
• 7+ years industry experience with a PhD in Biomedical Informatics
Notice to Recruiting Agencies
If you represent a recruiting agency, please do not submit resumes to any person or any email address at Ingenuity Systems, unless your firm has a written agreement with Ingenuity Systems. Please refrain from contacting any Ingenuity Systems employee with the intent to solicit business. Ingenuity Systems is not responsible for any fees related to unsolicited resumes.
To apply: Click on the link below
