Hi All,
I wonder if anyone knows the trick of modifying the config.xml file generated in Illumina MiSeq runs so that a CASAVA or OLB can convert bcl files into fastq files. I understand that usually there is no need to do it since the secondary analysis in the MiSeq Reporter will do it automatically. But we did run into some errors which led to interruption of the secondary analysis so now we need to manually convert the bcl files into fastq files for further analysis.
Many thanks
Wingtec
I wonder if anyone knows the trick of modifying the config.xml file generated in Illumina MiSeq runs so that a CASAVA or OLB can convert bcl files into fastq files. I understand that usually there is no need to do it since the secondary analysis in the MiSeq Reporter will do it automatically. But we did run into some errors which led to interruption of the secondary analysis so now we need to manually convert the bcl files into fastq files for further analysis.
Many thanks
Wingtec
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