Hello,
I have used the 1000 genomes data slicer tool to generate a vcf file which I would like to combine with one of my own. However, when I use the gatk -T CombineVariants tool, I get a "not enough columns" error message:
"ERROR MESSAGE: Line 2: there aren't enough columns for line chr10 93528
We expected 9 tokens but saw 1"
I noticed that the 1000 genome data is parsed, does this have anything to do with it?
Thanks in advance!
I have used the 1000 genomes data slicer tool to generate a vcf file which I would like to combine with one of my own. However, when I use the gatk -T CombineVariants tool, I get a "not enough columns" error message:
"ERROR MESSAGE: Line 2: there aren't enough columns for line chr10 93528
We expected 9 tokens but saw 1"
I noticed that the 1000 genome data is parsed, does this have anything to do with it?
Thanks in advance!