Dear all,
I am wondering if there is a maximum possible indel length, which is still detectable in an alignment of paired-end 150bp Illumina reads.
I am using the BCFtools package to call Indels on novoaligned short reads and noticed that called indels dont exceed a certain number like 70bp.
Thank you for your comments.
I am wondering if there is a maximum possible indel length, which is still detectable in an alignment of paired-end 150bp Illumina reads.
I am using the BCFtools package to call Indels on novoaligned short reads and noticed that called indels dont exceed a certain number like 70bp.
Thank you for your comments.
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