Does anyone know the best way to discover only the common SNPs across multiple Bam files?
Is this best achieved running each Bam individually and somehow filtering the vcf files or can it be done by inputting all Bam files at the mpileup stage?
would be very grateful if anyone could share their commands/experience
many thanks
Huw
Is this best achieved running each Bam individually and somehow filtering the vcf files or can it be done by inputting all Bam files at the mpileup stage?
would be very grateful if anyone could share their commands/experience
many thanks
Huw
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