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  • How to build the fly genome in Bowtie

    Sorry this is such a basic question, but several people have given me different answers and none so far have worked. I am trying to align the various chromosome parts for further sequence alignment work. I have tried various commands, listing of the files themselves, listing the path of the files and *.fa (as all the files are in fastA format). When I list the path, the program tells me it can't read it.

    I just need some good help, please...
    Last edited by lilithdog; 12-14-2009, 08:26 AM. Reason: needed to add a question mark

  • #2
    Thanks, but I sort of figured it out.

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