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Old 10-28-2014, 09:50 PM   #1
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Join Date: May 2012
Posts: 80
Default expectation of contig and scaffold length

I have assembled Illumina paired-end reads (2X101 bp) of one library of insert size 240 bp of WGS of polyploid plant sequences . I have obtained around contig N50 1 Kbp. My estimated genome size is 2Gbp.

How much contig N50 and scaffold N50 minimum size expected for better assembly.
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denovo genome assembly

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