I am trying to get mapping statistics for the number of reads matching to the target region in an exome capture experiment. I have a bed file from the library manufacturer. I have tried both Bedtools and BedUtils. Both files tell me the .bed file is not properly formatted asking if the start and end position are integers. The file appears to be properly formatted to me. Lines are tab-delimitted and look like:
chr1 728281 728500
Any thoughts?
Thanks,
Mike
chr1 728281 728500
Any thoughts?
Thanks,
Mike
Comment