Greetings everyone,
as a beginner with the Illumina GA IIx I am currently sitting on a mate-pair run I'd love to screen vor chromosomal breakpoints, preferrably with BreakDancer.
But for some reason, I feel a bit stuck and could use a big push into the right direction. Is there any comprehensive resource on the net that demonstrates how to get from GA IIx Basecalls from a mate-pair-library (Pipeline 1.6, managed to align to hg19 with GERALD) to a structural variation analysis?
Thanks for letting me steal your time. :/
Best regards,
as a beginner with the Illumina GA IIx I am currently sitting on a mate-pair run I'd love to screen vor chromosomal breakpoints, preferrably with BreakDancer.
But for some reason, I feel a bit stuck and could use a big push into the right direction. Is there any comprehensive resource on the net that demonstrates how to get from GA IIx Basecalls from a mate-pair-library (Pipeline 1.6, managed to align to hg19 with GERALD) to a structural variation analysis?
Thanks for letting me steal your time. :/
Best regards,