Hi,
I have samples that we have exome sequence. Threse have been aligned using BWA and variants called using GATK. I would like to calculate the summary statistics across all the individuals (not for each sample )( for example, the percentage of reads aligned , the mean target coverage etc). can this be done? If so how?
Thanks,
Kay
I have samples that we have exome sequence. Threse have been aligned using BWA and variants called using GATK. I would like to calculate the summary statistics across all the individuals (not for each sample )( for example, the percentage of reads aligned , the mean target coverage etc). can this be done? If so how?
Thanks,
Kay
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