Hello,
I am new to the area of microbiome sequencing so any thoughts/ideas/suggestions here would be greatly appreciated however my main question is the following: Is it possible to get species level detail for oral microbiome samples when sequencing the V4 region only? If yes, what are the best bioinformatic tools to use?
We will be using the Illumina sequencing platform for our samples. Are there any thoughts regarding using Illumina Genome Analyzer vs Ion Torrent for sequencing?
Thank you so much for any thoughts regarding these topics.
-Jennifer
I am new to the area of microbiome sequencing so any thoughts/ideas/suggestions here would be greatly appreciated however my main question is the following: Is it possible to get species level detail for oral microbiome samples when sequencing the V4 region only? If yes, what are the best bioinformatic tools to use?
We will be using the Illumina sequencing platform for our samples. Are there any thoughts regarding using Illumina Genome Analyzer vs Ion Torrent for sequencing?
Thank you so much for any thoughts regarding these topics.
-Jennifer
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