After installing HTSeq on Mac OS X Yosemite v10.10.3 and running htseq-count, I get the error:
I have installed HTSeq using the instructions on their site and using easy_install. Both resulted in the same error. Looking back at the build output, I noticed a warning that may help in figuring out whats going on.
Any suggestions?
Thank you.
Code:
Traceback (most recent call last): File "/usr/local/bin/htseq-count", line 5, in <module> pkg_resources.run_script('HTSeq==0.6.1p1', 'htseq-count') File "/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pkg_resources.py", line 492, in run_script self.require(requires)[0].run_script(script_name, ns) File "/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pkg_resources.py", line 1350, in run_script execfile(script_filename, namespace, namespace) File "/Library/Python/2.7/site-packages/HTSeq-0.6.1p1-py2.7-macosx-10.10-intel.egg/EGG-INFO/scripts/htseq-count", line 3, in <module> import HTSeq.scripts.count File "/Library/Python/2.7/site-packages/HTSeq-0.6.1p1-py2.7-macosx-10.10-intel.egg/HTSeq/__init__.py", line 9, in <module> from _HTSeq import * File "_HTSeq.pyx", line 14, in init HTSeq._HTSeq (src/_HTSeq.c:34537) File "/Library/Python/2.7/site-packages/HTSeq-0.6.1p1-py2.7-macosx-10.10-intel.egg/HTSeq/StepVector.py", line 26, in <module> _StepVector = swig_import_helper() File "/Library/Python/2.7/site-packages/HTSeq-0.6.1p1-py2.7-macosx-10.10-intel.egg/HTSeq/StepVector.py", line 22, in swig_import_helper _mod = imp.load_module('_StepVector', fp, pathname, description) ImportError: dlopen(/Library/Python/2.7/site-packages/HTSeq-0.6.1p1-py2.7-macosx-10.10-intel.egg/HTSeq/_StepVector.so, 2): no suitable image found. Did find: /Library/Python/2.7/site-packages/HTSeq-0.6.1p1-py2.7-macosx-10.10-intel.egg/HTSeq/_StepVector.so: mach-o, but wrong architecture
Code:
ld: warning: ignoring file /opt/local/lib/gcc49/libstdc++.dylib, file was built for x86_64 which is not the architecture being linked (i386): /opt/local/lib/gcc49/libstdc++.dylib ld: warning: ignoring file /opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.2/libgcc.a, file was built for archive which is not the architecture being linked (i386): /opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.2/libgcc.a ld: warning: ignoring file /opt/local/lib/gcc49/libgcc_ext.10.5.dylib, missing required architecture i386 in file /opt/local/lib/gcc49/libgcc_ext.10.5.dylib (1 slices)
Thank you.
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