I'm not sure that this works for you, but anyway if you have left and right fasta files and want to detect the paired-end and the single-end reads you will found usefull this script.https://github.com/lexnederbragt/den...leave_pairs.py
Needs biopython installed. http://biopython.org/wiki/Biopython
Needs biopython installed. http://biopython.org/wiki/Biopython
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