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hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.
Bioinformatics. 2011 Mar 30;
Authors: Chen L, Wu G, Ji H
SUMMARY: hmChIP is a database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains 2016 samples from 492 ChIP-seq and ChIP-chip experiments, representing a total of 170 proteins and 11,069,914 protein-DNA interactions. A web server provides interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell type dependencies, and cross-sample variability of protein-DNA interactions. AVAILABILITY: http://jilab.biostat.jhsph.edu/datab...-bin/hmChIP.pl CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
PMID: 21450710 [PubMed - as supplied by publisher]
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hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.
Bioinformatics. 2011 Mar 30;
Authors: Chen L, Wu G, Ji H
SUMMARY: hmChIP is a database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains 2016 samples from 492 ChIP-seq and ChIP-chip experiments, representing a total of 170 proteins and 11,069,914 protein-DNA interactions. A web server provides interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell type dependencies, and cross-sample variability of protein-DNA interactions. AVAILABILITY: http://jilab.biostat.jhsph.edu/datab...-bin/hmChIP.pl CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
PMID: 21450710 [PubMed - as supplied by publisher]
More...
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