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  • Annovar -filtering

    Hi All,

    I want to use ANNOVAR to run variant reduction, in order to filter out previously identified SNP's in databases such as 1000G, dbSNP, esp6500.
    However I am not really sure of commands to use.

    Also, is there somewhere I can go and read to figure out what other filters to use?

    Could someone please help me out?
    Thank-you!

  • #2
    Here is a description.

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    • #3
      Hi,
      Thank-you for the reply. I looked at the link, that kind of gives an idea of how to pick those SNP's that have been identified already.
      I am looking to do just the opposite.
      Could you point me in the right direction...
      Thank-you!
      Amrita

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